![]() The ability to automatically zero out selected genotypes for specific individuals in order to resolve Mendelian inconsistencies (See Section 9.1.4↓). ![]() Input support for Variant Call Format (VCF, BCF, compressed VCF) files, including flexible filtering on input (See Section 9.4↓). Input and output support for the widely-used PLINK format files (See Section 9.2↓). Input and output support for Mega2 format files that contain informative header lines and are readable into R (See Section 9.1↓). The ability to simulate genotype errors (See section 12.10↓). ![]() The availability of our Genetic Map Interpolator for aiding in constructing genetic maps of markers (See Section 10↓). The ability to run in an automated way using batch files (See Section 23↓). The ability to create custom tracks of results for visualization in the UCSC genome browser (See Section 20↓). The ability to create publication-quality PDF plots of the results using our nplplot R library (See Section 19↓). In addition to the ability to reformat data for a variety of analysis programs, other useful features of Mega2 include:
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